Separate plotting code from data prep

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: vimcheck
 Title: Diagnostics for Vaccine Impact Modelling Consortium Burden and
     Impact Estimates
-Version: 0.0.1
+Version: 0.0.3
 Authors@R: c(
     person("Pratik", "Gupte", , "p.gupte24@imperial.ac.uk", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-5294-7819")),
@@ -29,15 +29,16 @@ Imports:
     ggplot2,
     glue,
     readr,
-    reshape2,
     rlang,
+    scales,
     tidyr
 Suggests: 
     knitr,
     rmarkdown,
     spelling,
     testthat (>= 3.0.0),
     tibble,
+    vdiffr,
     withr
 VignetteBuilder: 
     knitr

NAMESPACE

@@ -3,17 +3,35 @@
 export(basic_burden_sanity)
 export(check_demography_alignment)
 export(file_dict_colnames)
-export(impact_check)
 export(plot_age_patterns)
 export(plot_compare_demography)
 export(plot_coverage_set)
 export(plot_fvp)
 export(plot_global_burden)
 export(plot_global_burden_decades)
+export(prep_plot_age)
+export(prep_plot_burden_decades)
+export(prep_plot_coverage_set)
+export(prep_plot_demography)
+export(prep_plot_fvp)
+export(prep_plot_global_burden)
 export(theme_vimc)
-export(transform_coverage_fvps)
+export(theme_vimc_noxaxis)
 export(validate_complete_incoming_files)
 export(validate_file_dict_template)
 export(validate_template_alignment)
-importFrom(dplyr,.data)
+importFrom(ggplot2,'%+replace%')
+importFrom(ggplot2,aes)
+importFrom(ggplot2,facet_grid)
+importFrom(ggplot2,facet_wrap)
+importFrom(ggplot2,geom_col)
+importFrom(ggplot2,geom_hline)
 importFrom(ggplot2,ggplot)
+importFrom(ggplot2,label_wrap_gen)
+importFrom(ggplot2,labeller)
+importFrom(ggplot2,labs)
+importFrom(ggplot2,scale_fill_distiller)
+importFrom(ggplot2,scale_x_continuous)
+importFrom(ggplot2,scale_y_continuous)
+importFrom(ggplot2,vars)
+importFrom(rlang,.data)

NEWS.md

@@ -1,3 +1,19 @@
+# vimcheck 0.0.3
+
+- Separated data-prep for plotting from plotting functions.
+
+- Added tests for plotting preparation and plotting functions.
+
+- Removed impact and FVPs checker functions.
+
+- Importing `rlang::.data` data pronoun in plotting function; works overall.
+
+# vimcheck 0.0.2
+
+- Added initial data validation functions and some tests.
+
+- Added VIMC _ggplot2_ theme.
+
 # vimcheck 0.0.1
 
 - Added GHA workflows to notify of changed dependencies, auto-render `README.md` from `README.Rmd`, and update the copyright year annually.