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Pull requests: nf-core/modules
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Update METABAT2_METABAT2 to not compress input files when stageIn module is true (and topics conversion)
#9769
opened Jan 26, 2026 by
jfy133
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17 tasks
Update BCFTOOLS/ISEC: additional arguments
#9766
opened Jan 23, 2026 by
georgiakes
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2 of 17 tasks
feat: Add emit statements to support Nextflow workflow outputs
#9765
opened Jan 23, 2026 by
pinin4fjords
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1 task
Fix variable redeclarations for strict syntax compliance (from branch)
#9756
opened Jan 22, 2026 by
ewels
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miniasm/ updated to use the new versions topics
#9755
opened Jan 22, 2026 by
MohineTAlam
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17 tasks done
migrate toulligqc to topic versions
#9750
opened Jan 22, 2026 by
eit-maxlcummins
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5 of 10 tasks
migrate shovill module to topic versions
#9748
opened Jan 22, 2026 by
eit-maxlcummins
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5 of 10 tasks
update to new versions capture for checkm2 databasedownload and checkm2 predict
#9744
opened Jan 22, 2026 by
eit-maxlcummins
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5 of 10 tasks
Remove unused variables from stub section
#9736
opened Jan 22, 2026 by
JoseEspinosa
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4 tasks done
feat(yallhap/classify): Add new module for Y-chromosome haplogroup classification
#9704
opened Jan 20, 2026 by
trianglegrrl
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Draft
4 tasks done
Update all deeptools conda environment YAML files to version 3.5.6
#9685
opened Jan 16, 2026 by
bentyeh
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2 of 17 tasks
Fix variable redeclarations for strict syntax compliance
#9684
opened Jan 16, 2026 by
ewels
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new subworkflow - fastq shortreads preprocess qc
#9665
opened Jan 15, 2026 by
vagkaratzas
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8 of 17 tasks
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