Skip to content

Conversation

@dimitri-yatsenko
Copy link
Member

@dimitri-yatsenko dimitri-yatsenko commented Jan 27, 2026

Summary

Re-execute all 22 documentation notebooks against PostgreSQL to validate:

  1. DataJoint 2.0 PostgreSQL support
  2. New logging configuration (PR Update database_prefix, logging docs, and 2.x version #142):
    • DJ_LOG_STREAM env var (stdout/stderr routing)
    • JOBS log level for job status messages
  3. Renamed setting (PR Update database_prefix, logging docs, and 2.x version #142):
    • database.schema_prefixdatabase.database_prefix
    • DJ_SCHEMA_PREFIXDJ_DATABASE_PREFIX

Changes

  • All 22 notebooks re-executed with DJ_BACKEND=postgresql
  • Notebook outputs updated with PostgreSQL execution results

Test Results

============================================================
SUMMARY (POSTGRESQL)
============================================================
  Successful: 22
  Failed: 0

All notebooks executed successfully against POSTGRESQL!

Notebooks Executed

How-to (3)

  • master-part.ipynb
  • model-relationships.ipynb
  • read-diagrams.ipynb

Tutorials - Advanced (4)

  • custom-codecs.ipynb
  • distributed.ipynb
  • json-type.ipynb
  • sql-comparison.ipynb

Tutorials - Basics (6)

  • 01-first-pipeline.ipynb
  • 02-schema-design.ipynb
  • 03-data-entry.ipynb
  • 04-queries.ipynb
  • 05-computation.ipynb
  • 06-object-storage.ipynb

Tutorials - Domain (4)

  • allen-ccf.ipynb
  • calcium-imaging.ipynb
  • electrophysiology.ipynb
  • ephys-with-npy.ipynb

Tutorials - Examples (5)

  • blob-detection.ipynb
  • fractal-pipeline.ipynb
  • hotel-reservations.ipynb
  • languages.ipynb
  • university.ipynb

Related

🤖 Generated with Claude Code

Re-execute all 22 notebooks with PostgreSQL backend to validate
DataJoint 2.0 PostgreSQL support.

All notebooks pass successfully against PostgreSQL.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
@dimitri-yatsenko dimitri-yatsenko changed the title Execute notebooks against PostgreSQL Execute notebooks against PostgreSQL (validates logging + database_prefix changes) Jan 27, 2026
@MilagrosMarin MilagrosMarin merged commit 963c3fa into main Jan 27, 2026
1 check passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants