pysmurf-controller: Update sodetlib version to v0.6.2

[dpdutcher]

New sodetlib version fixes bug in time constant analysis for detectors near saturation, and provides additional configuration parameters to control amplifier biasing.

Description

fit_tmin is again available as a parameter that can be specified. If left as None, dynamic tmin calculation is used.
Dynamic tmin calculation rewritten to rely on the stored polarity of a detector's response, rather than abs(signal)

For amplifier bias parameters, amp_{amp}_gate_volt_{min/max} are added to the dev cfg and referenced in the amplifier biasing routines.

Motivation and Context

Issues with time constant fitting of near-saturated detectors shown here:
https://docs.google.com/presentation/d/1oGefvf0J7R-OqJHX4xY_ArVm5rNWToZq-wb7sOqg1t8/edit?slide=id.g3b710008148_0_20#slide=id.g3b710008148_0_20

How Has This Been Tested?

Kyohei and Daniel have re-run bias step analyses and saw the spuriously-low time constants disappear, with results similar to the old fixed tmin=1.5 ms results.

Types of changes

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)

Checklist:

• My code follows the code style of this project.
• My change requires a change to the documentation.
• I have updated the documentation accordingly.

[dpdutcher]

@BrianJKoopman seems like simonsobs/sodetlib#494 caused this test image build to fail:

[ocs-pysmurf-agent 5/9] RUN pip3 install -e .
0.856 ERROR: File "setup.py" not found. Directory cannot be installed in editable mode: /sodetlib
0.856 (A "pyproject.toml" file was found, but editable mode currently requires a setup.py based build.)
ERROR: process "/bin/sh -c pip3 install -e ." did not complete successfully: exit code: 1

[BrianJKoopman]

@BrianJKoopman seems like simonsobs/sodetlib#494 caused this test image build to fail:

[ocs-pysmurf-agent 5/9] RUN pip3 install -e . 0.856 ERROR: File "setup.py" not found. Directory cannot be installed in editable mode: /sodetlib 0.856 (A "pyproject.toml" file was found, but editable mode currently requires a setup.py based build.) ERROR: process "/bin/sh -c pip3 install -e ." did not complete successfully: exit code: 1

Can you try dropping the -e? It shouldn't really be needed. If that doesn't work I can take a closer look tomorrow.

I'm pushing towards the PyPI installation for this, so we'll start installing from there soon. I just opened simonsobs/sodetlib#497.

[BrianJKoopman]

This looks good to me. Let me know how you want to handle the one comment I made about the -e flag.

Also, is there any effect on the 'user' end for this agent? Config changes needed or anything?

[BrianJKoopman]

Looks good!