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Add `conda: "bettercode"` to all rules in both simple_workflow and rnaseq Snakemake workflows. Also add `--sdm conda` flag to the run targets in both Makefiles. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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This is an interim check-in, in advance of breaking the monorepo into a a set of separate repos under the new organization.