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  1. nanodisco nanodisco Public

    nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.

    R 72 7

  2. mbin mbin Public

    mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads

    Python 25 3

  3. SMALR SMALR Public

    SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.

    Python 9 6

  4. 6mASCOPE 6mASCOPE Public

    Python 9 1

  5. BEAST BEAST Public

    Bacterial Epigenomics Analysis SuiTe

    R 8 2

  6. SMRTER SMRTER Public

    Single Molecule Real Time sequencing Epigenetic Refinement

    R 6 2

Repositories

Showing 10 of 10 repositories
  • AkkPD1 Public

    a pipeline for Akkermansia strain phylogroup assignment and anti-PD1 response prediction

    fanglab/AkkPD1’s past year of commit activity
    R 0 0 0 0 Updated Dec 2, 2025
  • LongTrack Public

    LongTrack is a novel framework that uses long-read metagenomic assemblies and reliable informatics tailored for FMT strain tracking.

    fanglab/LongTrack’s past year of commit activity
    Python 4 0 1 0 Updated Oct 24, 2025
  • mbin Public

    mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads

    fanglab/mbin’s past year of commit activity
    Python 25 3 7 4 Updated Dec 26, 2022
  • nanodisco Public

    nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.

    fanglab/nanodisco’s past year of commit activity
    R 72 7 5 0 Updated May 20, 2022
  • 6mASCOPE Public
    fanglab/6mASCOPE’s past year of commit activity
    Python 9 1 0 0 Updated Feb 3, 2022
  • MeMoRe Public

    Tool for validation of methylation motifs detected with SMRT sequencing

    fanglab/MeMoRe’s past year of commit activity
    R 3 0 0 0 Updated Jul 9, 2021
  • BEAST Public

    Bacterial Epigenomics Analysis SuiTe

    fanglab/BEAST’s past year of commit activity
    R 8 2 0 0 Updated May 4, 2020
  • SMRTER Public

    Single Molecule Real Time sequencing Epigenetic Refinement

    fanglab/SMRTER’s past year of commit activity
    R 6 2 3 0 Updated Jan 29, 2019
  • SMALR Public

    SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.

    fanglab/SMALR’s past year of commit activity
    Python 9 6 7 0 Updated Apr 12, 2018
  • MatrixEpistasis Public

    Ultrafast exhaustive epistasis scan for quantitative traits with covariate adjustment

    fanglab/MatrixEpistasis’s past year of commit activity
    R 6 4 2 0 Updated Mar 5, 2018

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