Bump dependencies to latest compatible versions

.github/workflows/coverage.yaml

@@ -34,7 +34,7 @@ jobs:
         uses: actions/checkout@v5
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: default
           activate-environment: default
@@ -59,7 +59,7 @@ jobs:
         uses: actions/checkout@v5
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: default
           activate-environment: default
@@ -95,7 +95,7 @@ jobs:
         uses: actions/checkout@v5
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: default
           activate-environment: default

.github/workflows/dashboard.yaml

@@ -43,7 +43,7 @@ jobs:
           fetch-depth: 0
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: default
           activate-environment: default

.github/workflows/docs.yaml

@@ -114,7 +114,7 @@ jobs:
       # Set up the pixi package manager and install dependencies from pixi.toml.
       # Uses frozen lockfile to ensure reproducible builds.
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: default
           activate-environment: default

.github/workflows/pypi-publish.yaml

@@ -21,7 +21,7 @@ jobs:
           fetch-depth: '0' # full history with tags to get the version number by versioningit
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: default
           activate-environment: default

.github/workflows/pypi-test.yaml

@@ -30,7 +30,7 @@ jobs:
 
     steps:
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           run-install: false
           cache: false

.github/workflows/quality.yaml

@@ -40,7 +40,7 @@ jobs:
         uses: actions/checkout@v5
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: default
           activate-environment: default

.github/workflows/release-notes.yaml

@@ -25,7 +25,7 @@ jobs:
           fetch-depth: 0 # full history with tags to get the version number
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: default
           activate-environment: default

.github/workflows/test.yaml

@@ -88,7 +88,7 @@ jobs:
           fetch-depth: '0' # full history with tags to get the version number by versioningit
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: ${{ env.PIXI_ENVS }}
           run-install: true
@@ -190,7 +190,7 @@ jobs:
           path: . # directory to extract downloaded zipped artifacts
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: ${{ env.PIXI_ENVS }}
           run-install: true

.github/workflows/tutorial-tests.yaml

@@ -41,7 +41,7 @@ jobs:
         uses: actions/checkout@v5
 
       - name: Set up pixi
-        uses: prefix-dev/setup-pixi@v0.9.0
+        uses: prefix-dev/setup-pixi@v0.9.3
         with:
           environments: default
           activate-environment: default

pixi.toml

@@ -52,10 +52,7 @@ jupyterlab = '*'                                      # Jupyter notebooks
 pixi-kernel = '*'                                     # Pixi Jupyter kernel
 easydiffraction = { version = '*', extras = ['all'] } # Main package
 
-[target.osx.pypi-dependencies]
-h5py = "==3.14.0" # macOS only: avoid broken 3.15.0 wheel
-
-# Features for specific Python versions
+# Specific features
 
 # Each feature sets a specific Python version for the environment.
 
@@ -193,7 +190,7 @@ docs-setup = { depends-on = [
 dist-build = 'python -m build --wheel --outdir dist'
 spdx-update = 'python tools/update_spdx.py'
 #dev-install = 'uv pip install --requirements pyproject.toml --extra all'
-dev-install = "python -m uv pip install --editable '.[all]'"
+dev-install = "python -m uv pip install --force-reinstall --editable '.[all]'"
 npm-config = 'npm config set registry https://registry.npmjs.org/'
 prettier-install = 'npm install --no-save --no-audit --no-fund prettier prettier-plugin-toml'
 pre-commit-setup = 'pre-commit clean && pre-commit uninstall && pre-commit install --hook-type pre-commit --hook-type pre-push --overwrite'

pyproject.toml

@@ -22,7 +22,7 @@ classifiers = [
 ]
 requires-python = '>=3.11,<3.14'
 dependencies = [
-  'numpy<2.4',      # Numerical computing library; <2.4 required for cryspy 0.9.x compatibility
+  'numpy',          # Numerical computing library
   'colorama',       # Color terminal output
   'tabulate',       # Pretty-print tabular data for terminal output
   'asciichartpy',   # ASCII charts for terminal output
@@ -68,8 +68,8 @@ docs = [
   'mike',                            # MkDocs: Versioned documentation support
   'mkdocs',                          # Static site generator
   'mkdocs-material',                 # Documentation framework on top of MkDocs
-  'mkdocs-autorefs<1.3.0',           # MkDocs: Auto-references support. 1.3.0 => DeprecationWarning: Setting a fallback anchor function is deprecated and ...
-  'mkdocs-jupyter',                  # MkDocs: Jupyter notebook support.
+  'mkdocs-autorefs',                 # MkDocs: Auto-references support
+  'mkdocs-jupyter',                  # MkDocs: Jupyter notebook support
   'mkdocs-plugin-inline-svg',        # MkDocs: Inline SVG support
   'mkdocs-markdownextradata-plugin', # MkDocs: Markdown extra data support, such as global variables
   'mkdocstrings-python',             # MkDocs: Python docstring support