Open
Conversation
|
Check out this pull request on See visual diffs & provide feedback on Jupyter Notebooks. Powered by ReviewNB |
IAlibay
reviewed
Feb 6, 2026
Member
IAlibay
left a comment
There was a problem hiding this comment.
I agree that the notebook in its current form isn't that useful, but I do think we need a cookbook that just shows how you create an AlchemicalNetwork from a set of Transformations.
As far as I can see, we don't have any cookbooks for that currently?
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
resolves #290
with the deprecation of
to_rbfe_alchemical_network(OpenFreeEnergy/gufe#726), I think it's more appropriate for users to look at the tutorials for how to create an alchemical network specific to their use-case.Open to thoughts.