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DrHB/README.md

Hi, I'm Habib 👋

📍 USA | 🧬 ML Generalist | 📄 Published Researcher

PyTorch TensorFlow Kaggle Python TypeScript Node.js Claude Codex macOS

Building ML solutions for problems I barely understand. Side effects may include: deployed models, published papers, confused reviewers.

Current Projects

  • 🪲 LymeBridge - Remote control Claude Code through Telegram via tmux
  • 🧬 Ribonanza - Transformer + Graph Attention Networks for RNA structure and chemical reactivity | Stanford / bioRxiv
  • ✈️ Contrail - Multi-encoder vision transformers with temporal modeling for satellite imagery | Google Research
  • 🧊 DeepIce - Graph-based transformers for neutrino tracking in the Antarctic IceCube Observatory | EPJC
  • 🌊 Pulsar - Deep learning on LIGO spectrograms for neutron star detection | IOP
  • 🔬 Gleason - Attention-pooled CNNs for Gleason grading | Nature Medicine

Selected Publications

  • IceCube—Neutrinos in Deep Ice: top 3 solutions from the public Kaggle competition | European Physical Journal C
  • Learning to detect continuous gravitational waves | IOP Machine Learning
  • Ribonanza: deep learning of RNA structure through dual crowdsourcing | bioRxiv
  • Artificial intelligence for diagnosis and Gleason grading of prostate cancer: the PANDA challenge | Nature Medicine
  • High-speed atomic force microscopy visualization of the dynamics of the multienzyme fatty acid synthase | ACS Nano
  • Mechanism of foreign DNA recognition by a CRISPR RNA-guided surveillance complex from Pseudomonas aeruginosa | Nucleic Acids Research
  • Evolutionary origins of the multienzyme architecture of giant fungal fatty acid synthase | Structure

Pinned Loading

  1. icecube-2nd-place icecube-2nd-place Public

    IceCube Neutrino Detection | Transformer + GNN |EPJC 2025

    Python 23 5

  2. prostate-cancer-detection prostate-cancer-detection Public

    CNN ensemble for prostate cancer Gleason grading

    Python 18 2

  3. rna-stanford rna-stanford Public

    Transformer + GAT for RNA chemical reactivity prediction| Stanford Ribonanza

    Jupyter Notebook 11 1

  4. icecube-journal icecube-journal Public

    Jupyter Notebook 32 1

  5. 2nd-place-contrails 2nd-place-contrails Public

    Multi-encoder segmentation for contrail detection in satellite imagery | Google Researc

    Python 11 5

  6. retinopathy-detection retinopathy-detection Public

    Jupyter Notebook 43 12